History of Aromacity | Heterocyclics | Polycyclics

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History of Aromacity

The first known use of the word "aromatic" as a chemical term -- namely, to apply to compounds that contain the phenyl radical -- occurs in an article by August Wilhelm Hofmann in 1855.If this is indeed the earliest introduction of the term, it is curious that Hofmann says nothing about why he introduced an adjective indicating olfactory character to apply to a group of chemical substances, only some of which have notable aromas. It is the case, however, that many of the most odoriferous organic substances known are terpenes, which are not aromatic in the chemical sense. But terpenes and benzenoid substances do have a chemical characteristic in common, namely higher unsaturation indexes than many aliphatic compounds, and Hofmann may not have been making a distinction between the two categories.


The cyclohexatriene structure for benzene was first proposed by August Kekulé in 1865. Over the next few decades, most chemists readily accepted this structure, since it accounted for most of the known isomeric relationships of aromatic chemistry. However, it was always puzzling that this purportedly highly-unsaturated molecule was so unreactive toward addition reactions.
The discoverer of the electron J. J. Thomson, in 1921 placed three equivalent electrons between each carbon atom in benzene.

An explanation for the exceptional stability of benzene is conventionally attributed to Sir Robert Robinson, who was apparently the first (in 1925 ) to coin the term aromatic sextet as a group of six electrons that resists disruption.
In fact, this concept can be traced further back, via Ernest Crocker in 1922,to Henry Edward Armstrong, who in 1890, in an article entitled The structure of cycloid hydrocarbons, wrote the (six) centric affinities act within a cycle...benzene may be represented by a double ring (sic) ... and when an additive compound is formed, the inner cycle of affinity suffers disruption, the contiguous carbon-atoms to which nothing has been attached of necessity acquire the ethylenic condition.
Here, Armstrong is describing at least four modern concepts. First, his "affinity" is better known nowadays as the electron, which was only to be discovered seven years later by J. J. Thomson. Second, he is describing electrophilic aromatic substitution, proceeding (third) through a Wheland intermediate, in which (fourth) the conjugation of the ring is broken. He introduced the symbol C centered on the ring as a shorthand for the inner cycle, thus anticipating Eric Clar's notation. It is argued that he also anticipated the nature of wave mechanics, since he recognized that his affinities had direction, not merely being point particles, and collectively having a distribution that could be altered by introducing substituents onto the benzene ring (much as the distribution of the electric charge in a body is altered by bringing it near to another body).
The quantum mechanical origins of this stability, or aromaticity, were first modelled by Hückel in 1931. He was the first to separate the bonding electrons in sigma and pi electrons.
Characteristics of aromatic (Aryl) compounds
An aromatic compound contains a set of covalently-bound atoms with specific characteristics:
A delocalized conjugated π system, most commonly an arrangement of alternating single and double bonds
Coplanar structure, with all the contributing atoms in the same plane
Contributing atoms arranged in one or more rings
A number of π delocalized electrons that is even, but not a multiple of 4. This is known as Hückel's rule. Permissible numbers of π electrons include 2, 6, 10, 14, and so on
Special reactivity in organic reactions such as electrophilic aromatic substitution and nucleophilic aromatic substitution
Whereas benzene is aromatic (6 electrons, from 3 double bonds), cyclobutadiene is not, since the number of π delocalized electrons is 4, which of course is a multiple of 4. The cyclobutadienide (2−) ion, however, is aromatic (6 electrons). An atom in an aromatic system can have other electrons that are not part of the system, and are therefore ignored for the 4n + 2 rule. In furan, the oxygen atom is sp² hybridized. One lone pair is in the π system and the other in the plane of the ring (analogous to C-H bond on the other positions). There are 6 π electrons, so furan is aromatic.
Aromatic molecules typically display enhanced chemical stability, compared to similar non-aromatic molecules. The circulating π electrons in an aromatic molecule produce ring currents that oppose the applied magnetic field in NMR. The NMR signal of protons in the plane of an aromatic ring are shifted substantially further down-field than those on non-aromatic sp² carbons. This is an important way of detecting aromaticity. By the same mechanism, the signals of protons located near the ring axis are shifted up-field. Planar monocyclic molecules containing 4n π electrons are called antiaromatic and are, in general, destabilized. Molecules that could be antiaromatic will tend to alter their electronic or conformational structure to avoid this situation, thereby becoming non-aromatic. For example, cyclooctatetraene (COT) distorts itself out of planarity, breaking π overlap between adjacent double bonds. Aromatic molecules are able to interact with each other in so-called π-π stacking: the π systems form two parallel rings overlap in a "face-to-face" orientation. Aromatic molecules are also able to interact with each other in an "edge-to-face" orientation: the slight positive charge of the substituents on the ring atoms of one molecule are attracted to the slight negative charge of the aromatic system on another molecule.
Many of the earliest-known examples of aromatic compounds, such as benzene and toluene, have distinctive pleasant smells. This property led to the term "aromatic" for this class of compounds, and hence to "aromaticity" being the eventually-discovered electronic property of them.


Aromatic compound classifications


The key aromatic hydrocarbons of commercial interest are benzene, toluene, ortho-xylene and para-xylene. About 35 million tonnes are produced worldwide every year. They are extracted from complex mixtures obtained by the refining of oil or by distillation of coal tar, and are used to produce a range of important chemicals and polymers, including styrene, phenol, aniline, polyester and nylon.


Heterocyclics


In heterocyclic aromatics, one or more of the atoms in the aromatic ring is of an element other than carbon. This can lessen the ring's aromaticity, and thus (as in the case of furan) increase its reactivity. Other examples include pyridine, imidazole, pyrazole, oxazole, thiophene, and their benzannulated analogs (benzimidazole, for example).


Polycyclics


Polycyclic aromatic hydrocarbons (PAH) are molecules containing two or more simple aromatic rings fused together by sharing two neighboring carbon atoms (see also simple aromatic rings). Examples are naphthalene, anthracene and phenanthrene.
Substituted aromatics
Many chemical compounds contain simple aromatic rings in their structure. Examples include trinitrotoluene (TNT), acetylsalicylic acid (aspirin), paracetamol, and DNA, which contains both purine and pyrimidine.
Aromaticity in other systems
Aromaticity is found in ions as well: the cyclopropenyl cation (2e system), the cyclopentadienyl anion (6e system), the tropylium ion (6e) and the cyclooctatetraene dianion (10e). Aromatic properties have been attributed to non-benzenoid compounds such as tropone. Aromatic properties are tested to the limit in a class of compounds called cyclophanes.
A special case of aromaticity is found in homoaromaticity where conjugation is interrupted by a single sp³ hybridized carbon atom. When carbon in benzene is replaced by other elements in borabenzene, silabenzene, germanabenzene, stannabenzene, phosphorine or pyrylium salts the aromaticity is still retained. Aromaticity is also not limited to compounds of carbon, oxygen and nitrogen.
Metal aromaticity is believed to exist in certain metal clusters of aluminium. Möbius aromaticity occurs when a cyclic system of molecular orbitals formed from pπ atomic orbitals and populated in a closed shell by 4n (n is an integer) electrons is given a single half-twist to correspond to a Möbius topology. Because the twist can be left-handed or right-handed, the resulting Möbius aromatics are dissymmetric or chiral. Up to now there is no doubtless proof, that a Möbius aromatic molecule was synthesized.Aromatics with two half-twists corresponding to the paradromic topologies first suggested by Johann Listing have been proposed by Rzepa in 2005.In carbo-benzene the ring bonds are extended with alkyne and allene groups.

Synthesised Hydrocarbons |Metal-Organic Frameworks | Polymer

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Synthesised Hydrocarbons

An alternative to hydrides is to use regular hydrocarbon fuels as the hydrogen carrier. Then a small hydrogen reformer would extract the hydrogen as needed by the fuel cell. However, these reformers are slow to react to changes in demand and add a large incremental cost to the vehicle powertrain.
Direct methanol fuel cells do not require a reformer, but provide a lower energy density compared to conventional fuel cells, although this could be counter balanced with the much better energy densities of ethanol and methanol over hydrogen. Alcohol fuel is a renewable resource.
Solid-oxide fuel cells can run on light hydrocarbons such as propane and methane without a reformer, or can run on higher hydrocarbons with only partial reforming, but the high temperature and slow startup time of these fuel cells makes them prohibitive for automobiles.
Carbon nanotubes



Hydrogen carriers based on nanostructured carbon (such as carbon buckyballs and nanotubes) have been proposed. Despite occasional claims of greater than 50 wt% hydrogen storage, it has generally come to be accepted that less than 1 wt% is practical.

Metal-Organic Frameworks

Another class of synthetic porous materials that could store hydrogen efficiently are Metal-Organic Frameworks. In 2006, chemists at UCLA and the University of Michigan have achieved hydrogen storage concentrations of up to 7.5% weight in a Metal Organic Framework material. However, the storage was achieved at the low temperature of 77 Kelvin.

Polymer

Aug 4 2006 - A team of Korean researchers led by Professor Lim Ji-sun of Seoul National University’s School of Physics found a new material with the hydrogen storage efficiency of 7.6 percent based on first-principles electronic structure calculations for hydrogen binding to metal-decorated polymers of many different kinds, the hydrogen can be stored in solid matter in normal temperatures and pressures by attaching a titanium atom to a polyacetylene.

Glass microspheres

Hollow glass microspheres can be utilized for controlled storage and release of hydrogen.
Hydrogen-Storage Materials Based on Imidazolium Ionic Liquids
In 2007 Dupont and others reported Hydrogen-Storage Materials Based on Imidazolium Ionic Liquids. Simple alkyl(aryl)-3-methylimidazolium N-bis(trifluoromethanesulfonyl)imidate salts that possess very low vapour pressure, high density, and thermal stability and are not inflammable can add reversibly 6-12 hydrogen atoms in the presence of classical Pd/C or Ir0 nanoparticle catalysts and can be used as alternative materials for on-board hydrogen-storage devices. These salts can hold up to 30 g L-1 of hydrogen at atmospheric pressure, which is twice that compressed hydrogen gas can attain at 350

Phosphonium borate

In 2006 researchers of University of Windsor reported on reversible hydrogen storage in a non-metal phosphonium borate .The phosphino-borane on the left accepts one equivalent of hydrogen at one atmosphere and 25°C and expels it again by heating to 100°C. The storage capacity is 0.25 wt% still rather below the 6 to 9 wt% required for practical use.

Triaryl Phosphate | Phosphorus Flame Retardant

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Triaryl Phosphate (T.A.P.)

Phosphorus Flame Retardant

TAP ( Triaryl Phosphate ) is a low viscosity synthetic Triaryl phosphate ester, Triaryl Phosphate finds uses in wide variety of application as Flame retardant plasticizer

Uses of riaryl Phosphate (T.A.P.)

Leather cloth (PVC) : Upholstery, Book binding, Seat covers
Utility articles: Footwear, Raincoats, Handbags, Fiber glass cellulose acetate
Extruded articles : Cables (PVC & rubber), hoses, flexible pipe, coal mining, conveyor belts
Coatings: Nitrocellulose lacquers, phenolic resins, lube oils

Typical properties
Physical appearance :Clear Liquid
Phosphorus content:wt % 9.0
Specific gravity @ 25° C:1.21±0.005
Boiling Point (decomposes )°C :415° C
Flash Point °C :220°C
Solubility (G/100 g Solvent): Water Insoluble , Completely soluble in Methylene chloride ,Methanol ,Toluene ,Methyl Ethyl Ketone

TAP is recommended for use in plastisols for fabrics coating in formulation of fire resistant fluid and other applications where its low, stable viscosity offers improved processing.
TAP can give a driver finish to coated fabrics than other Triaryl phosphate EASTER. TAP has high plastcizers efficiency that enables formulator to achieve better flame retardance at lower cost. It can also be used as flame retardant in phenolic laminates The use of proper equipment is recommended. Excess exposure to the product should be avioded.
Wash thoroughly after handling. Product should be stored in cool, dry and well ventilated area away from incompatible materials. Unless stated, shelf life of the product will be 12 months from the date of packing. For additional handling & toxicological information, consult PAC Material safety Data sheet.

Isotopes | High Resolution Mass Spectrometry

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Isotopes

Since a mass spectrometer separates and detects ions of slightly different masses, it easily distinguishes different isotopes of a given element. This is manifested most dramatically for compounds containing bromine and chlorine, as illustrated by the following examples. Since molecules of bromine have only two atoms, the spectrum on the left will come as a surprise if a single atomic mass of 80 amu is assumed for Br. The five peaks in this spectrum demonstrate clearly that natural bromine consists of a nearly 50:50 mixture of isotopes having atomic masses of 79 and 81 amu respectively. Thus, the bromine molecule may be composed of two 79Br atoms (mass 158 amu), two 81Br atoms (mass 162 amu) or the more probable combina3. tion of 79Br-81Br (mass 160 amu). Fragmentation of Br2 to a bromine cation then gives rise to equal sized ion peaks at 79 and 81 amu.

The presence of chlorine or bromine in a molecule or ion is easily detected by noticing the intensity ratios of ions differing by 2 amu. In the case of methylene chloride, the molecular ion consists of three peaks at m/z=84, 86 & 88 amu, and their diminishing intensities may be calculated from the natural abundances given above. Loss of a chlorine atom gives two isotopic fragment ions at m/z=49 & 51amu, clearly incorporating a single chlorine atom. Fluorine and iodine, by contrast, are monoisotopic, having masses of 19 amu and 127 amu respectively. It should be noted that the presence of halogen atoms in a molecule or fragment ion does not change the odd-even mass rules given above.

Two other common elements having useful isotope signatures are carbon, 13C is 1.1% natural abundance, and sulfur, 33S and 34S are 0.76% and 4.22% natural abundance respectively. For example, the small m/z=99 amu peak in the spectrum of 4-methyl-3-pentene-2-one (above) is due to the presence of a single 13C atom in the molecular ion. Although less important in this respect, 15N and 18O also make small contributions to higher mass satellites of molecular ions incorporating these elements.

Fragmentation Patterns

The fragmentation of molecular ions into an assortment of fragment ions is a mixed blessing. The nature of the fragments often provides a clue to the molecular structure, but if the molecular ion has a lifetime of less than a few microseconds it will not survive long enough to be observed. Without a molecular ion peak as a reference, the difficulty of interpreting a mass spectrum increases markedly. Fortunately, most organic compounds give mass spectra that include a molecular ion, and those that do not often respond successfully to the use of milder ionization conditions. Among simple organic compounds, the most stable molecular ions are those from aromatic rings, other conjugated pi-electron systems and cycloalkanes. Alcohols, ethers and highly branched alkanes generally show the greatest tendency toward fragmentation.
The mass spectrum of dodecane illustrates the behavior of an unbranched alkane. Since there are no heteroatoms in this molecule, there are no non-bonding valence shell electrons. Consequently, the radical cation character of the molecular ion (m/z = 170) is delocalized over all the covalent bonds. Fragmentation of C-C bonds occurs because they are usually weaker than C-H bonds, and this produces a mixture of alkyl radicals and alkyl carbocations. The positive charge commonly resides on the smaller fragment, so we see a homologous series of hexyl (m/z = 85), pentyl (m/z = 71), butyl (m/z = 57), propyl (m/z = 43), ethyl (m/z = 29) and methyl (m/z = 15) cations. These are accompanied by a set of corresponding alkenyl carbocations (e.g. m/z = 55, 41 &27) formed by loss of 2 H. All of the significant fragment ions in this spectrum are even-electron ions. In most alkane spectra the propyl and butyl ions are the most abundant.
The presence of a functional group, particularly one having a heteroatom Y with non-bonding valence electrons (Y = N, O, S, X etc.), can dramatically alter the fragmentation pattern of a compound. This influence is thought to occur because of a "localization" of the radical cation component of the molecular ion on the heteroatom. After all, it is easier to remove (ionize) a non-bonding electron than one that is part of a covalent bond. By localizing the reactive moiety, certain fragmentation processes will be favored. These are summarized in the following diagram, where the green shaded box at the top displays examples of such "localized" molecular ions. The first two fragmentation paths lead to even-electron ions, and the elimination (path #3) gives an odd-electron ion. Note the use of different curved arrows to show single electron shifts compared with electron pair shifts.

Mass Spectrometry
The charge distributions shown above are common, but for each cleavage process the charge may sometimes be carried by the other (neutral) species, and both fragment ions are observed. Of the three cleavage reactions described here, the alpha-cleavage is generally favored for nitrogen, oxygen and sulfur compounds. Indeed, in the previously displayed spectra of 4-methyl-3-pentene-2-one and N,N-diethylmethylamine the major fragment ions come from alpha-cleavages

The complexity of fragmentation patterns has led to mass spectra being used as "fingerprints" for identifying compounds. Environmental pollutants, pesticide residues on food, and controlled substance identification are but a few examples of this application. Extremely small samples of an unknown substance (a microgram or less) are sufficient for such analysis.
The following mass spectrum of cocaine demonstrates how a forensic laboratory might determine the nature of an unknown street drug.
Even though extensive fragmentation has occurred, many of the more abundant ions (identified by magenta numbers) can be rationalized by the three mechanisms shown above. The m/z = 42 ion might be any or all of the following: C3H6, C2H2O or C2H4N. A precise assignment could be made from a high-resolution m/z value (next section).Odd-electron fragment ions are often formed by characteristic rearrangements in which stable neutral fragments are lost. Mechanisms for some of these rearrangements have been identified by following the course of isotopically labeled molecular ions.

5. High Resolution Mass Spectrometry

Formula C6H12 C5H8O C4H8N2

Mass 84.0939 84.0575 84.0688

In assigning mass values to atoms and molecules, we have assumed integral values for isotopic masses. However, accurate measurements show that this is not strictly true. Because the strong nuclear forces that bind the components of an atomic nucleus together vary, the actual mass of a given isotope deviates from its nominal integer by a small but characteristic amount (remember E = mc2). Thus, relative to 12C at 12.0000, the isotopic mass of 16O is 15.9949 amu (not 16) and 14N is 14.0031 amu (not 14). By designing mass spectrometers that can determine m/z values accurately to four decimal places, it is possible to distinguish different formulas having the same nominal mass. The table on the right illustrates this important feature, and a double-focusing high-resolution mass spectrometer easily distinguishes ions having these compositions. Mass spectrometry therefore not only provides a specific molecular mass value, but it may also establish the molecular formula of an unknown compound.

HOW TO CLEAN pH ELECTRODES | HOW TO REJUVENATE pH ELECTRODES

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HOW TO CLEAN pH ELECTRODES

Cleaning of the electrode (note that in case of gel electrodes replacing of the reference solution is usually impossible):

General
Soak in 0.1M HCl for half an hour.
Drain and refill the reference solution.
Soak the electrode in filling solution for one hour.

Inorganic:
Soak in 0.1M tetrasodium EDTA solution for 15 minutes.
Drain and refill the reference solution.
Soak the electrode in filling solution for one hour.

Protein:
Soak in 1% pepsin / 0.1M HCl for 15 minutes.
Drain and refill the reference solution.
Soak the electrode in filling solution for one hour.

Grease and Oil:
Rinse with detergent or ethanol solution.
Drain and refill the reference solution.
Soak the electrode in filling solution for one hour. Electrode response may be enhanced by substituting a mixture of 1:1 pH 4 buffer and filling solution for the soaking solution.

Cleaning of the clogged junction:
Pollution by sulfides:
Use a solution of 8% thiocarbamide in 1 mol/L HCl.
Keep the electrode in the above solution till junction's color turns pale.
Pollution by silver chloride:
Use concentrated ammonia solution.
Keep the electrode in the above solution for about 12 hours.
Rinse and put into pH 4 buffer for at least 1 hour.
Other contamination have to be removed by cleaning with distilled water, alcohol or mixtures of acids. If nothing else helps you may consider use of ultrasonic cleaner as last resort.



HOW TO REJUVENATE pH ELECTRODES

Note: following procedures are a last resort. They may work, they may won't. You may try them before throwing electrode away.

First of all - clean the electrode as described in electrode cleaning section, then:

Soak the electrode for 4-8 hours in 1M HCl solution.

Rinse it and move to pH 7 buffer for an hour.

Give it a try.

If the electrode is still not working:
Fill the electrode with filling solution.
Move to the fume hood!
Place the electrode in the 10% nitric acid solution on a hotplate. Heat to boiling, and keep it in the solution for 10 minutes.
Place 50 mL of filling solution in a second clean beaker. Heat, although boiling is not necessary.
While the electrode is still hot, transfer it to the beaker of heated filling solution. Set aside to cool. When the electrode has cooled, test the electrode as described in the testing electrode parameters section. This rejuvenating procedure is particularly effective with gel filled combination electrodes. Do not be concerned if a small amount of the gel protrudes through the reference frit during the boiling in nitric acid step. This is both acceptable and useful.

If this procedure does not result in a pH electrode that responds quickly and has a slope of 55 - 61 mV/pH unit, the electrode is unrecoverable and should be thrown away. Remember, the procedure was proposed for the electrode that was to be thrown away anyway.
Some manufacturers suggest the electrode may be reactivated by treating with a diluted solution of hydrofluoric acid followed by subsequent conditioning in electrolyte. Before considering the procedure, take into account that hydrofluoric acid is extremally dangerous! Safer (but still dangerous) approach can be to use some slightly acidic solution containing fluorides, like 20 wt% ammonium bifluoride, NH4HF2 - put glass bulb part of the electrode in the solution for a minute followed by 15 seconds bath in 6 M hydrochloric acid. Rinse the electrode well and soak for 24 hours in a pH buffer with pH .
























































Bond Stretching

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Energy due to Bond Stretching Whenever a bond is compressed or stretched the the energy goes up.

The energy potential for bond stretching and compressing is described by an equation similar to Hooke's law for a spring, except a cubic term is added.

This cubic term helps to keep the energy from rising too sharply as the bond is stretched.

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