• Mass Spectrometry | Ultraviolet-Visible Spectroscopy | Infrared Spectroscopy

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Spectroscopy

The spectroscopic techniques described below do not provide a three-dimensional picture of a molecule, but instead yield information about certain characteristic features. A brief summary of this information follows:

• Mass Spectrometry: Sample molecules are ionized by high energy electrons. The mass to charge ratio of these ions is measured very accurately by electrostatic acceleration and magnetic field perturbation, providing a precise molecular weight. Ion fragmentation patterns may be related to the structure of the molecular ion.

Ultraviolet-Visible Spectroscopy:

Absorption of this relatively high-energy light causes electronic excitation. The easily accessible part of this region (wavelengths of 200 to 800 nm) shows absorption only if conjugated pi-electron systems are present.

• Infrared Spectroscopy:

Absorption of this lower energy radiation causes vibrational and rotational excitation of groups of atoms. within the molecule. Because of their characteristic absorptions identification of functional groups is easily accomplished.

Types of Phospholipid | Phosphoglycerides | Sphingomyelin

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Phospholipid

Phosphatidyl choline is the major component of lecithin. It is also a source for choline in the synthesis of acetylcholine in cholinergic neurons.
Phospholipids are a class of lipids, and a major component of all biological membranes, along with glycolipids, cholesterol and proteins. Understanding of the aggregation properties of these molecules is known as lipid polymorphism and forms part of current academic research.
Components
They are built upon to a nitrogen-containing alcohol like ethanolamine or an organic compound such as choline. The "head" of the phospholipid is polar and the "tails" are non-polar.

Types of Phospholipid

Phosphoglycerides

In phosphoglycerides, the carboxyl group of each fatty acid is esterified to the hydroxyl groups on carbon-1 and carbon-2 of the glycerol molecule. The phosphate group is attached to carbon-3 by an ester link. This molecule, known as a phosphatidate, is present in small quantities in membranes, but is also a precursor for the other phosphoglycerides.
In phosphoglyceride synthesis, phosphatidates must be activated first. Phospholipids can be formed from an activated diacylglycerol or an activated alcohol.

Phosphatidyl serine and phosphatidyl inositol are formed from a phosphoester linkage between the hydroxyl of an alcohol (serine or inositol) and cytidine diphosphodiacylglycerol (CDP-diacylglycerol).
In animals, plants and yeast the synthesis of phospatidyl ethanolamine, the alcohol is phosphorylated by ATP first, and subsequently reacts with cytidine triphosphate (CTP) to form the activated alcohol (CDP-ethanolamine). The alcohol then reacts with a diacylglycerol to form the final product. In bacteria, the serine moiety of Phosphatidyl serine is decarboxylated to give phospatidyl ethanolamine.
In mammals, phosphatidyl choline can be synthesized via two separate pathways; a series of reactions similar to phosphatidyl ethanolamine synthesis, and the methylation of phosphatidyl ethanolamine, which is catalyzed by phosphatidyl ethanolamine methyltransferase, an enzyme produced in the liver.

Phosphatidyl ethanolamine is the major component of cephalin.

Sphingomyelin

The backbone of sphingomyelin is sphingosine, an amino alcohol formed from palmitate and serine. The amino terminal is acylated with a long-chain acyl CoA to yield ceramide. Subsequent substitution of the terminal hydroxyl group by phosphatidyl choline forms sphingomyelin.

Sphingomyelin is also present in all eukaryotic cell membranes, especially the plasma membrane, and is particularly concentrated in the nervous system because sphingomyelin is a major component of myelin, the fatty insulation wrapped around nerve cells by Schwann cells or oligodendrocytes. Multiple sclerosis is a disease characterised by deterioration of the myelin sheath, leading to impairment of nervous conduction.


Amphipathic character

Due to its polar nature, the head of a phospholipid is hydrophilic (attracted to water); the lipophilic (or often known as hydrophobic) tails are not attracted to water. When placed in water, phospholipids form one of a number of lipid phases. In biological systems this is restricted to bilayers, in which the lipophilic tails line up against one another, forming a membrane with hydrophilic heads on both sides facing the water. This allows it to form liposomes spontaneously, or small lipid vesicles, which can then be used to transport materials into living organisms and study diffusion rates into or out of a cell membrane.

This membrane is partially permeable, capable of elastic movement, and has fluid properties, in which embedded proteins (integral or peripheral proteins) and phospholipid molecules are able to move laterally. Such movement can be described by the Fluid Mosaic Model, that
describes the membrane as a mosaic of lipid molecules that act as a solvent for all the substances and proteins within it, so proteins and lipid molecules are then free to diffuse laterally through the lipid matrix and migrate over the membrane. Cholesterol contributes to membrane fluidity by hindering the packing together of phospholipids. However, this model has now been superseded, as through the study of lipid polymorphism it is now known that the behaviour of lipids under physiological (and other) conditions is not simple.

Heat Temperature and the Particle Theory | Expanding and Contracting

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Heat, Temperature, and the Particle Theory

What actually is the difference between water at 20ºC and water at 50ºC?
What is the difference between heat and temperature?
How are these questions related?
Can any one hypothesis answer both questions?

The Particle Theory

Scientists over the years came up with many ideas, or hypotheses, to try to explain the difference between heat and temperature. One such hypothesis was thought of by Lavoisier. He suggested that heat might be a substance with mass, which he called caloric. But Lavoisier's idea was not supported by experimental observations, and scientists looked for other ways to explain heat.
Scientists now use the kinetic molecular theory, or particle theory, to explain heat and temperature and the difference between, say, 20ºC and 50ºC. The particle theory is based on a model that suggests that all matter is made up of tiny particles too small to be seen. According to this model, these particles are always moving- they have energy. The more energy they have, the faster they move. So far, all the evidence is made up of moving particles. That is why we call the particle model for matter a theory.


So what is the difference between heat and temperature? According to the particle theory, heat is energy, and it is transferred from hotter substances to colder ones. Temperature is a measure of the average energy level of the particles in a substance.
Both hot and cold water are made up of moving particles, some moving quickly, and some moving slowly. But on average, the particles move faster in hot water than in cold water.

Expanding and Contracting

The particle theory is a useful model to explain why substances expand when they are heated and contract when they are cooled. At high temperatures, particles have more energy, move more quickly, and have more collisions. As a result, they take up more space, and the substance expands. At lower temperatures, particles have less energy, move more slowly, and have fewer collisions. They take up less space, and the substance contracts.

Self Check
In your own words, describe the difference between heat and temperature.
Two cups contain the same amount of water. a) What device would be best for comparing the average energy of the particles of each sample of water? b) Explain how this device would help you compare the energies of the particles.
Apply
Use the particle theory to explain how an outdoor thermometer works.
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